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Fakultät Bio- und Chemieingenieurwesen

Publications

Joel Mieres-Perez*, Elsa Sanchez-Garcia* "Quantum mechanics/molecular mechanics multiscale modeling of biomolecules" Advances in Physical Organic Chemistry 2020 54, 143-183. DOI: 10.1016/bs.apoc.2020.08.002.

- Jan Muench, Frank Kirchhoff, Mirja Harms, Ashraf H Abadi, Monika Maged Wadi Habib, Alexander Zelikin, Sheiliza Carmali, Elsa Sanchez Garcia, Pandian Sokkar. EPI-X4 based peptides and derivatives thereof. Patent PCT/EP2021/054794, WO2021/170782, Sep 2nd, 2021.

- Jan Muench, Frank Kirchhoff, Mirja Harms, Ashraf H Abadi, Monika Maged Wadi Habib, Alexander Zelikin, Sheiliza Carmali, Elsa Sanchez Garcia, Pandian Sokkar. EPI-X4 based peptides and derivatives thereof, US Patent App. 17/801,684, 2023

- Sanchez-Garcia E. et. al. Peptide and use thereof in the prevention of therapy-related leukemia. 2022, European Patent Office application number: 22 153 506.5

2023

  1. Mirja Harms, Rikke Fabech Hansson, Andrea Gilg, Yasser Almeida-Hernández, Jessica Löffler, Armando Rodríguez-Alfonso, Monica M. W. Habib, Dan Albers, Nermin S. Ahmed, Ashraf H. Abadi, Gordon Winter, Volker Rasche, Ambros J. Beer, Gilbert Weidinger, Nico Preising, Ludger Ständker, Sebastian Wiese, Elsa Sanchez-Garcia, Alexander N. Zelikin, Jan Münch “Development of N-Terminally Modified Variants of the CXCR4-Antagonistic Peptide EPI-X4 for Enhanced Plasma Stability” Journal of Medicinal Chemistry 2023, DOI: 10.1021/acs.jmedchem.3c01128
  2. Yunjun Cao, Joel Mieres-Perez, Karsten Lucht, Iris Ulrich, Paul Schweer, Elsa Sanchez-Garcia*, Karina Morgenstern*, Wolfram Sander* “C-C coupling of carbene molecules on a metal surface in the presence of water” Journal of the American Chemical Society 2023, 145, 21, 11544–11552, DOI:10.1021/jacs.2c12274
  3. Carolin Kling, Anja Sommer, Yasser Almeida-Hernandez, Armando Rodríguez, Julio A Perez-Erviti, Rajendra Bhadane, Ludger Ständker, Sebastian Wiese, Holger Barth, Mario Pupo-Meriño, Arto T Pulliainen, Elsa Sánchez-García, Katharina Ernst “Inhibition of pertussis toxin by human α-defensins-1 and-5: Differential mechanisms of action” International Journal of Molecular Sciences (Special Issue “Current Advances in Peptide Inhibitors”) 2023, 24 (13), 10557, DOI: 10.3390/ijms241310557
  4. Mirja Harms, Nikaïa Smith, Mingyu Han, Rüdiger Groß, Pascal von Maltitz, Christina Stürzel, Yasser B Ruiz-Blanco, Yasser Almeida-Hernández, Armando Rodriguez-Alfonso, Dominique Cathelin, Birgit Caspar, Bouceba Tahar, Sophie Sayettat, Nassima Bekaddour, Kanika Vanshylla, Franziska Kleipass, Sebastian Wiese, Ludger Ständker, Florian Klein, Bernard Lagane, Arnaud Boonen, Dominique Schols, Serge Benichou, Elsa Sanchez-Garcia, Jean-Philippe Herbeuval, Jan Münch "Spermine and spermidine bind CXCR4 and inhibit CXCR4- but not CCR5-tropic HIV-1 infection" Science Advances  2023, 9, eadf8251, DOI: 10.1126/sciadv.adf8251
  5. Yunjun Cao, Joel Mieres-Perez, Julien Frederic Rowen, Elsa Sanchez-Garcia, Wolfram Sander, and Karina Morgenstern “Chirality control of a single carbene molecule by tip-induced van der Waals interactions"  Nature Communications 2023, 14, 4500,  DOI: 10.1038/s41467-023-39870-y
  6. Jonas Neblik, Abbna Kirupakaran, Christine Beuck, Joel Mieres Perez, Felix Carlsson Niemeyer, My-Hue Le, Ursula Telgheder, Jessica Felice Schmuck, Alexander Dudziak, Peter Bayer, Elsa Sanchez-Garcia*, Stefan Westermann*, Thomas Schrader* “Multivalent molecular tweezers disrupt the essential NDC80 interaction with microtubules” Journal of the American Chemical Society 2023, 145, 28, 15251–15264, DOI:10.1021/jacs.3c02186
  7. Raghuvir Haridas Gaonkar, Yannik Tim Schmidt, Rosalba Mansi, Yasser Almeida-Hernanadez, Elsa Sanchez-Garcia, Mirja Harms, Jan Münch, Melpomeni Fani "Development of a new class of CXCR4 targeting radioligands based on the endogenous antagonist EPI-X4 for oncological applications" Journal of Medicinal Chemistry (Special issue “Diagnostic and Therapeutic Radiopharmaceuticals” 2023,  66, 13, 8484–8497; DOI: 10.1021/acs.jmedchem.3c00131
  8. Lia-Raluca Olari, Richard Bauer, Marta Gil Miró, Verena Vogel, Laura Cortez Rayas, Rüdiger Groß, Andrea Gilg, Raphael Klevesath, Armando A. Rodríguez Alfonso, Kübra Kaygisiz, Ulrich Rupp, Pradeep Pant, Joel Mierez-Perez, Lena Steppe, Ramona Schäffer, Lena Rauch-Wirth, Carina Conzelmann, Janis A. Müller, Fabian Zech, Fabian Gerbl, Jana Bleher, Nico Preising, Ludger Ständker, Sebastian Wiese, Dietmar Rudolph Thal, Christian Haupt, Hendrik R. A. Jonker, Manfred Wagner, Elsa Sanchez-Garcia, Tanja Weil, Steffen Stenger, Marcus Fändrich, Jens von Einem, Clarissa Read, Paul Walther, Frank Kirchhoff, Barbara Spellerberg, Jan Münch "The C-terminal 32-mer fragment of hemoglobin alpha is an amyloidogenic peptide with antimicrobial properties" Cellular and Molecular Life Sciences 2023, 80, 151, DOI: 10.1007/s00018-023-04795-8
  9. Hedieh Shahpasand-Kroner, Ibrar Siddique, Ravinder Malik, Gabriel Linares, Magdalena Ivanova, Justin Ichida, Tatjana Weil, Jan Münch, Elsa Sanchez-Garcia, Frank-Gerrit Klärner, Thomas Schrader, and Gal Bitan "Molecular tweezers – supramolecular hosts with broad-spectrum biological applications" Pharmacological Reviews, 2023, 75 (2), 263-308, DOI: 10.1124/pharmrev.122.000654
  10. Lukas Wettstein, Patrick Immenschuh, Tatjana Weil, Carina Conzelmann, Yasser Almeida-Hernández, Markus Hoffmann, Amy Kempf, Inga Nehlmeier, Rishikesh Lotke, Moritz Petersen, Steffen Stenger, Frank Kirchhoff, Daniel Sauter, Stefan Pöhlmann, Elsa Sanchez-Garcia and Jan Münch “Native and activated antithrombin inhibits TMPRSS2 activity and SARS-CoV-2 infection” Journal of Medical Virology 2023, 95 (1), e28124, DOI: 10.1002/jmv.28124. Journal Cover

2022

  1. Tatjana Weil, Abbna Kirupakaran, My-Hue Le, Philipp Rebmann, Joel Mieres-Perez, Leila Issmail, Carina Conzelmann, Janis A. Müller, Lena Rauch, Andrea Gilg, Lukas Wettstein, Rüdiger Groß, Clarissa Read, Tim Bergner, Sandra Axberg Pålsson, Nadja Uhlig, Valentina Eberlein, Heike Wöll, Frank-Gerrit Klärner, Steffen Stenger, Beate M. Kümmerer, Hendrik Streeck, Giorgio Fois, Manfred Frick, Peter Braubach, Anna-Lena Spetz, Thomas Grunwald, James Shorter, Elsa Sanchez-Garcia*, Thomas Schrader*, and Jan Münch* “Advanced Molecular Tweezers with Lipid Anchors against SARS-CoV-2 and Other Respiratory Viruses” JACS Au 2022, 2 (9), 2187-2202. DOI: 10.1021/jacsau.2c00220
  2. Abhijit Bera, Stefan Henkel, Joel Mieres-Perez, Yetsedaw Andargie Tsegaw, Elsa Sanchez-Garcia, Wolfram Sander, Karina Morgenstern “Surface Diffusion Aided by a Chirality Change of Self-Assembled Oligomers under 2D Confinement” Angewandte Chemie Int. Ed. 2022, 61, e202212245 DOI: 10.1002/anie.202212245
  3. Sandra Romero-Molina, Yasser B. Ruiz-Blanco, Joel Mieres-Perez, Mirja Harms, Jan Münch, Michael Ehrmann and Elsa Sanchez-Garcia* “PPI-Affinity: A web tool for the prediction and optimization of protein – peptide and protein – protein binding affinity” Journal of Proteome Research 2022, 21, 1829−1841. DOI: 10.1021/acs.jproteome.2c00020. Journal Cover
  4. Armando Rodríguez-Alfonso, Astrid Heck, Yasser B Ruiz-Blanco, Andrea Gilg, Ludger Ständker, Seah Ling Kuan, Tanja Weil, Elsa Sanchez-Garcia, Sebastian Wiese, Jan Münch, Mirja Harms “Advanced EPI-X4 derivatives covalently bind human serum albumin resulting in prolonged plasma stability International Journal of Molecular Sciences 2022, 23(23), 15029; DOI: 10.3390/ijms232315029
  5. Yasser B. Ruiz-Blanco*, Guillermin Agüero-Chapin, Sandra Romero-Molina, Agostinho Antunes, Lia-Raluca Olari, Barbara Spellerberg, Jan Münch and Elsa Sanchez-Garcia* “ABP-Finder: A Tool to Identify Antibacterial Peptides and the Gram-Staining Type of Targeted Bacteria” Antibiotics (Special Issue "Computational Approaches in Discovery & Design of Antimicrobial Peptides") 2022, 11(12), 1708, DOI: 10.3390/antibiotics11121708
  6. Nirnay Samanta, Yasser B. Ruiz-Blanco, Zamira Fetahaj, David Gnutt, Carter Lantz, Joseph A. Loo, Elsa Sanchez-Garcia*, Simon Ebbinghaus* “Superoxide Dismutase Folding Stability as a Target for Molecular Tweezers in SOD1-related Amyotrophic Lateral Sclerosis” ChemBioChem 2022, 23,  e20220039, DOI: 10.1002/cbic.202200396
  7. Juliana Rey, Maike Breiden, Vanda Lux, Anika Bluemke, Maike Steindel, Kamilla Ripkens, Bastian Möllers, Kenny Bravo Rodriguez, Prisca Boisguerin, Rudolf Volkmer, Joel Mieres-Perez, Tim Clausen, Elsa Sanchez-Garcia, and Michael Ehrmann “An allosteric HTRA1-calpain 2 complex with restricted activation profile” Proceedings of the National Academy of Sciences 2022, 119 (14) e2113520119. DOI: 10.1073/pnas.2113520119
  8. Mirja Harms, Rikke Fabech Hansson, Sheiliza Carmali, Yasser Almeida-Hernández, Elsa Sanchez-Garcia, Jan Münch and Alexander N. Zelikin. “Dimerization of the peptide CXCR4-antagonist on macromolecular and supramolecular protraction arms affords increased potency and enhanced plasma stability” Bioconjugate Chemistry 2022, 33 (4), 594-607. DOI: 10.1021/acs.bioconjchem.2c00034. Journal Cover
  9. Richard Kosinski, Joel Mieres Perez, Elisa-C. Schöneweiß, Yasser B. Ruiz-Blanco, Irene Ponzo, Kenny Bravo-Rodriguez, Michael Erkelenz, Sebastian Schlücker, Guido Uhlenbrock, Elsa Sanchez-Garcia* and Barbara Saccà* "The role of DNA nanostructures in the catalytic properties of an allosterically regulated protease" Science Advances 2022 8(1), eabk0425. DOI: 10.1126/sciadv.abk0425
  10. Dennis Aschmann, Cecilia Vallet, Sunil K. Tripathi, Yasser B. Ruiz-Blanco, Max Brabender, Carsten Schmuck, Elsa Sanchez-Garcia*, Shirley K. Knauer*, Michael Giese* "Selective Disruption of Survivin's Protein-Protein Interactions: A Supramolecular Approach Based on Guanidiniocarbonylpyrrole" ChemBioChem 2022, e202100618. DOI: 10.1002/cbic.202100618
  11. Kim N. Ingenbosch, Julio Cesar Vieyto-Nuñez, Yasser B. Ruiz-Blanco, Christian Mayer, Kerstin Hoffmann-Jacobsen*, and Elsa Sanchez-Garcia* “Effect of Organic Solvents on the Structure and Activity of a Minimal Lipase” The Journal of Organic Chemistry 2022 87 (3), 1669-1678. DOI: 10.1021/acs.joc.1c01136